you can use Skyscanner website to get a very good idea about prices and connections available:Probably going to start the trip at the BWI airport in baltimore, DCA in arlington or IAD in fairfax, then whatever's the cheapest conecting flight across the pacific. Any reccomendations, I can take a ferry there too from wherever.
Skyscanner
www.skyscanner.com
then you can search hotels from Rakuten and apartment/guest house from Sakura House:
Rakuten Travel: Book quality hotels and ryokans in Japan
One of Japan's leading hotel booking platforms. Find and book quality accommodations for your next trip to Japan. Rakuten Travel makes it easy to find a place that meets your personal needs. Don't miss out on our travel guides where you'll find recommended travel plans, useful information for...
travel.rakuten.com
SAKURA HOUSE® - Furnished Guest houses, Apartments, Share houses for rent in Tokyo, Izu and Kyoto since 1992.
SAKURA HOUSE® provides the easiest way to check in and stay in Tokyo, Izu and Kyoto since 1992. Personalized support & service by multilingual staff, free Wi-Fi, No key money, agent fee or guarantor needed. All utility costs are included. SAKURA EVENTS are held throughout the year. We all happy...
www.sakura-house.com
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